Bioconductor Gage package

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2.8k

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gage package error

updated 6.0 years ago by James W. MacDonald 65k • written 6.0 years ago by Miskey, Csaba ▴ 20

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1.7k

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kegg geneset genelist gage package

updated 6.7 years ago by Gordon Smyth 50k • written 6.7 years ago by sup230 ▴ 30

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1.4k

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R gage package rnaseq pathview

7.7 years ago joanito.liberti • 0

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1.6k

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gage gage package

updated 7.5 years ago by Luo Weijun ★ 1.6k • written 7.6 years ago by Michael • 0

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1.1k

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gage gage package gene expression matrix gene set analysis

5.8 years ago atakanekiz ▴ 30

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3.7k

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gage gage package pathview rna-seq

updated 2.2 years ago by Helen • 0 • written 6.2 years ago by tarun2 • 0

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936

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gage package path.ids RNA-Seq

7.8 years ago rl1385 • 0

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899

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gage package gage

5.8 years ago melkile26 • 0

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1.5k

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gage package deseq2

6.8 years ago sup230 ▴ 30

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913

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

7.8 years ago smt8n • 0

10 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10

Thanks for your thoughtful and detailed comment, Gordon

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …

Answer: How to save the DEXSeq results by Michael Love 41k

If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…

Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k

Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …

Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k

As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…

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Answer: Method to find pathways different between 2 groups

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

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